HsaEX0055270 @ hg38
Exon Skipping
Gene
ENSG00000230084 | RP4-613B23.1
Description
NA
Coordinates
chr3:42632629-42654388:-
Coord C1 exon
chr3:42653994-42654388
Coord A exon
chr3:42635234-42635294
Coord C2 exon
chr3:42632629-42632695
Length
61 bp
Sequences
Splice sites
3' ss Seq
TCTGCATTTCCTCTTTCCAGTGA
3' ss Score
8.81
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GGGGGGCGCGGACACGCGTGGTGTGCGCGGTCCCCGTGCAGCCCGCCCTGCCGCAGGCTGCCCTCCACCCCCAGCCCCAGCTCCAGCCCCCAGCCCGTCCCCACTGCTCATATCCGAGCAGATAGACCCCGGCCCCACCCTCCCGTGCTGAGCCTCCTTTCTGCCGGGAAGTTCGTCCGGGAGTCAAACATCGCTGCCCTCCGGTTGCGCCACGGAGGGGGAGCCAGGATAGGAAGCTGCCGTGAAATCAGGAAGCTGAGCGCGCCGGGCCCCGGATCCGAACAGAAAAGGCTTCCACCCGCTCCCCTGAGGGATCCCACGCTGAGGGACTGAACCCCGCACCCCAGCCGCGCTCACCACCCCCACCCTCTCGCCTGGGCTGCTCTGACCTGGGG
Seq A exon
TGAGGAGGAGTTTCACTGCTGTCATCATCATCTGACTCAGAACAGGATCTTGATCTTGGAG
Seq C2 exon
TTCACTTTCTGAAGATGATTCTGAAGAAGAGGAGGAATTGGAAGAGGAATCCGAGCCTTCTGAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230084-'0-6,'0-5,1-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGATCCCACGCTGAG
R:
AGGCTCGGATTCCTCTTCCAA
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development