HsaALTA1017827-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42643339-42644003:+
Coord C1 exon
chr3:42643339-42643395
Coord A exon
chr3:42643902-42643919
Coord C2 exon
chr3:42643920-42644003
Length
18 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGTTGTTGCCGTTAAAGCAGGTC
3' ss Score
2.49
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCATATGATCCCCACAGTCGATCCAG
Seq A exon
GTCCTACACCTACGATAG
Seq C2 exon
CTACTATAGCAGGAGTCGGAGTCGAAGTAGAAGCCAGAGAAGTGACAGTTACCACCGAGGCAGAAGTTATAATCGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-50-56,50-55,50-54,50-53-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCCAGGAGCAGCTCAT
R:
ACTTCTGCCTCGGTGGTAACT
Band lengths:
110-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains