HsaALTA1058240-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000230084 | RP4-613B23.1
Description
NA
Coordinates
chr3:42635234-42654388:-
Coord C1 exon
chr3:42653994-42654388
Coord A exon
chr3:42635295-42635335
Coord C2 exon
chr3:42635234-42635294
Length
41 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACTCCATTTTTCTCCACTAGGTG
3' ss Score
10.97
Exon sequences
Seq C1 exon
GGGGGGCGCGGACACGCGTGGTGTGCGCGGTCCCCGTGCAGCCCGCCCTGCCGCAGGCTGCCCTCCACCCCCAGCCCCAGCTCCAGCCCCCAGCCCGTCCCCACTGCTCATATCCGAGCAGATAGACCCCGGCCCCACCCTCCCGTGCTGAGCCTCCTTTCTGCCGGGAAGTTCGTCCGGGAGTCAAACATCGCTGCCCTCCGGTTGCGCCACGGAGGGGGAGCCAGGATAGGAAGCTGCCGTGAAATCAGGAAGCTGAGCGCGCCGGGCCCCGGATCCGAACAGAAAAGGCTTCCACCCGCTCCCCTGAGGGATCCCACGCTGAGGGACTGAACCCCGCACCCCAGCCGCGCTCACCACCCCCACCCTCTCGCCTGGGCTGCTCTGACCTGGGG
Seq A exon
GTGGTCTATATGCTCTTAATCTCTGCATTTCCTCTTTCCAG
Seq C2 exon
TGAGGAGGAGTTTCACTGCTGTCATCATCATCTGACTCAGAACAGGATCTTGATCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230084-0-5,0-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAAAGGCTTCCACCCG
R:
TGACAGCAGTGAAACTCCTCC
Band lengths:
139-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains