MmuALTA0012063-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121752407-121753092:+
Coord C1 exon
chr9:121752407-121752463
Coord A exon
NA
Coord C2 exon
chr9:121752991-121753092
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGTCATTGCTATTTAAGCAGATC
3' ss Score
4.41
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCCGGTCCAGGAGCAGCTCTTATGACCTCCATAGCCGCTCCAG
Seq A exon
NA
Seq C2 exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-52-49,52-48-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCTCCATAGCCGCTCC
R:
CCCGATGGTAACTGTCACTCC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types