HsaINT0113814 @ hg38
Intron Retention
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42632601-42633735:+
Coord C1 exon
chr3:42632601-42632823
Coord A exon
chr3:42632824-42633579
Coord C2 exon
chr3:42633580-42633735
Length
756 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGT
5' ss Score
9.15
3' ss Seq
GTGACTTGGTTTGTTCTAAGTCA
3' ss Score
3.13
Exon sequences
Seq C1 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACTCATTCAGAAGGCTCGGATTCCTCTTCCAATTCCTCCTCTTCTTCAGAATCATCTTCAGAAAGTGAACTTGAACATGAGAGAAGCAGAAGGAGGAAACATAAGAGGAGGCCAAAAGTTAAACGTTCTAAAAAGAGGCGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGGAATAAACATGCAATGAACCCAAAAGG
Seq A exon
GTACGTGTAAAACACCAATGTACTCTTACCTAAAAACAAACACTCTGGAATGGGAAAAGTATGTATAATTCTATAAACTCAATTTTATTACCTGTTATTGAAAAAGGATAGCACTTTTTAAACTTTAAATTGAAATCTGGCAAATCTAGGAGTAGGTAGCATAGGCATTTCATTTCAAAGATTTGTGTGTTTTCAGTTTTCGGGTGAAAATAGTCCTAAGAACTCTTTTTTTAAGAGATAGGGTCTTGCTCTGTTATCCAGGCTGGAATACAGTGGCACAATTATAGCTCACTGCATCCTCCACCTCCTGGGCTCAAGAGATCTTTCTGCATCAGCCTCCTGAGTAGCTAGGACTACGGGCGTATACCACTATGCTTGGCTAATTTTTAAATTTTTTGTAGAGACAGGGTCTTCCGCTATGTTGACCAGGCTGGTCTCTGACTCCTGTCCTCAAGCAATCCTCCCACCTAAGACCCCTAAAGTACTGGGATTACAGGTGTGAGCCACAATGCCTGGCCTCCTGGAACTCTTAAAATAAAAAAGTTAGGATCATTTAACAATTTTCCTATCAAAATTCTAGTCTTTGGGTTTTTCACTGGGTTGATATTGTTCTCTTTGTGAAAATCATATAACTCTTTTGAGTGAGACTTGTAAGCTATCGTTAATTATGCTGTTGTTTTAGTAACTAATTTTATGTGCTTTTATTATGAAATGCAAACATTATACATTTTAATCAGTGACTTGGTTTGTTCTAAG
Seq C2 exon
TCACTCTGAGAGGAGTGATACCAATGAAAAAAGGTCAGTTGATTCCAGTGCTAAAAGGGAAAAACCTGTGGTCCGCCCAGAAGAGATTCCTCCAGTGCCTGAGAACCGATTTTTACTGAGAAGAGATATGCCTGTTGTTACTGCAGAACCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857:ENST00000232978:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF105004=SR-25=FE(45.7=100)
A:
NA
C2:
PF105004=SR-25=FE(32.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAGGCTCGGATTCCTCT
R:
AGGTTCTGCAGTAACAACAGGC
Band lengths:
342-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development