DreINT0104763 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20504042-20504711:-
Coord C1 exon
chr24:20504510-20504711
Coord A exon
chr24:20504201-20504509
Coord C2 exon
chr24:20504042-20504200
Length
309 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CGACTCTTCCTGATTTACAGTCA
3' ss Score
6.08
Exon sequences
Seq C1 exon
TTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAG
Seq A exon
GTAAATGATTGTAAATTCTCATATACACCGTGCGTCATCTGTTTTGTTTCATCTGTTTGCATTTTATTTGTTATTCAGGAAAAGACCTAAATTAATAACACATTTGGTATTAGCCTTTACTGATACTTGTCAGCCATTTGGCAGTTTTTGACCTTGTCCAATTAAATGTAGTACATTGATAAACTTTTAAAATTCAAAACCGTCACGAAGGAAAAATATGCAATGATTAAGTTGTTCCTCCTATTTTTATAGTATGTCTTGTTTTGAATTTATAATAGAAATATACTGCCGACTCTTCCTGATTTACAG
Seq C2 exon
TCATGCTGAGGGCGAGATGGCAGAGGAAAATGATGGTGAAGCTGAACAGAATGTGAAAAGGGAGAAGCCTGTGGTCCGACCAGAAGAGATCCCACCTGTGCCAGAAAACCGTTTCCTGCTCCGCAGAGACATGCCTACCCAGGAGGAGGCAATAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.853 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGGCAAACTGAGAAAAGCA
R:
TCCTGGGTAGGCATGTCTCTG
Band lengths:
342-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]