GgaINT0091030 @ galGal3
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1857555-1858203:+
Coord C1 exon
chr2:1857555-1857777
Coord A exon
chr2:1857778-1858050
Coord C2 exon
chr2:1858051-1858203
Length
273 bp
Sequences
Splice sites
5' ss Seq
ATGGTGACT
5' ss Score
3.33
3' ss Seq
TACTTTTTTCCTCTTAGCAGCCT
3' ss Score
6
Exon sequences
Seq C1 exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
Seq A exon
GTGACTAGTTTCTTAAATTTAAGAATTTCAGAGAAATTTGAGAAACTTTCCTTTTTCATGAAGTACTCATGCAATTAATATGAAGGTGCTTTTATTCTGTAAGTTTGGACTGCATCCTTCTTTTAGCATAAAATGACTTAACGAAATGCATTTTGTTTTTGAAGTCATCTGATAGCTCGTTTCATCACGTGGGCTTATTTTGGGAATTCGCTCTGGAAAGTGGTGTTTGTCAGTTGATTCTGAATTATAACCTTACTTTTTTCCTCTTAGCAG
Seq C2 exon
CCTTTCTGACAAGAGCGATGTAACAGAAAAAGCAGTGGATGTCAGCACAAAGAGGGATAAGCCTGTGGTACGTCCTGAAGAAATTCCTCCAGTGCCTGAAAATAGATTTTTGCTGAGAAGAGATGTGCCTGTTGTCAGTACAGAACCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGTGGATCAGACCCTT
R:
CAGGCACATCTCTTCTCAGCA
Band lengths:
303-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]