RnoINT0101360 @ rn6
Intron Retention
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130381967-130383253:+
Coord C1 exon
chr8:130381967-130382189
Coord A exon
chr8:130382190-130383097
Coord C2 exon
chr8:130383098-130383253
Length
908 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
GGTGACTTGATTTATTTTAGTTA
3' ss Score
4.77
Exon sequences
Seq C1 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACACATTCAGAAGACTCGGACTCTTCTTCCAACTCCTCTTCCTCTTCAGAGTCATCCTCAGAAAGCGAAGTTGAACGAGAGAGAATCAGAAGGAGGAGACATAAGAGGAGGCCAAAAGTCAGACATACTAAAAAGAGACGGAAAGAGATGAGCGGTTCAGAGGAACTGAGAAGGAAGCGCACAGTGAGCCCTGAGGG
Seq A exon
GTAAGTGCGGGTCTGTGCTGACCCAGGCACAGGAACCTCTGAACTCAGTGTTCTTACTGTACTTGTAGAAGCAAGGAGCATTGGGTTTTAAACTGATATTTTTAAAATTTTATTTGCATTAGTGTTTTTCCTGCATGTGTGCCTGCGTGAGGGTGACAGGTCTTGGAGTTATAGGCACTTGTGAGCTACTACTGTGTGGGTGCTAGTCAATGAACCCAGGTCTTCTGGGAGAGCAGCCAGTGCTCCTAACTGATGAGCCATCTCTCCAGTCCCTGAAAAGTTTTTCTTTTAAAATACAGTATTTTTGACTTTGAGAATTTCTTTCATGTCTACAAAGTAATTTGATCCTTCACCTCCTAATCCCTCCTTTGAATTCCCCTGTCCACTATATCTCCCTTCTCTTTGTTTTTCTTTTAATAAGCTACTGAGCCTACTTAATGTGCAGGGCCACCCTGTGGAGCATAGGCAGAGTCTGTACCCCTGAAGAAAACTGATTCTCCCTAAAGCAAAACTTGGGCCATTGAGCTGCCTCAGTGGCTTCTCATCAAGCCTGACAAATTGGATTTGATTTCTGGGATACACATAGTCAAGAGAGAGTACCATCTCCCACAAGTAGTGTCTCACATCTACATCATGGTGTGTGCACAGCACACACAAGGAAATAGATAAGTGTGTTTTTTAAGAAGGAAAACATTAATCATTGACAACTTCCATTTCAGAATTTTAGCACTCAACTTTTTTCTCTTTTTAATTTTAACTTTAAAAATTTTCTTAGTGCTAGGTATTTTTCACTGTGTTGATGTTTTATAGATTGGTGAAAATCAAAATTGAAGCCAGTGTAAGCTTGCTCTTGCCTTTATTTTATGAGATGGCATTAATGTCTAAATTGGTGACTTGATTTATTTTAG
Seq C2 exon
TTACTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAGGTGATTCAAACACTAAAAGAGAAAAGCCCGTTGTTCGACCAGAAGAGATTCCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATGTGCCTGCCGTCGCTGTGGAGCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128:ENSRNOT00000071152:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF105004=SR-25=FE(55.6=100)
A:
NA
C2:
PF105004=SR-25=PD(24.1=60.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCAACACATTCAGAAGACTCG
R:
ACGGCAGGCACATCTCTTCTA
Band lengths:
342-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]