HsaEX0043063 @ hg38
Exon Skipping
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42619664-42630575:+
Coord C1 exon
chr3:42619664-42619708
Coord A exon
chr3:42621429-42621516
Coord C2 exon
chr3:42630546-42630575
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATATTTTAAAG
Seq A exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTATCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq C2 exon
TACCACAAAGCCTGCTCCACACCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-'17-21,'17-15,21-21
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGGAAAAGGTGGAGAATCAA
R:
TGTGGAGCAGGCTTTGTGGTA
Band lengths:
66-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development