GgaEX0007288 @ galGal3
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1844488-1855522:+
Coord C1 exon
chr2:1844488-1844532
Coord A exon
chr2:1846027-1846114
Coord C2 exon
chr2:1855493-1855522
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATATTTTTTCTTCAAACAGATG
3' ss Score
9.22
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTAATGGAAAAGGAGGTGAATCTATTTATGGTGGCTATTTTAAAG
Seq A exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAACCGAGGGAAACATACCAATGGTTCCCAATTTTTCAT
Seq C2 exon
AACAACAAAACCCGCTCCTCATCTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.167
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=PD(3.1=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGGAAAAGGAGGTGAATCTATT
R:
CATCAAGATGAGGAGCGGGTT
Band lengths:
74-162
Functional annotations
There are 0 annotated functions for this event