MmuEX0031808 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121639115-121650269:+
Coord C1 exon
chr9:121639115-121639142
Coord A exon
chr9:121640596-121640683
Coord C2 exon
chr9:121650240-121650269
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGAATGTGGTCTTTTGCAAAATGAAAAG
Seq A exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq C2 exon
AACTACAAAGCCTGCTCCACACCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'8-10,'8-8,10-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(7.4=70.0)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=PD(3.8=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGTGGTCTTTTGCAAAATGA
R:
GGTGTGGAGCAGGCTTTGTAG
Band lengths:
51-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: