MmuEX0031808 @ mm10
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121729636-121741151:+
Coord C1 exon
chr9:121729636-121729680
Coord A exon
chr9:121731478-121731565
Coord C2 exon
chr9:121741122-121741151
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
Seq A exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq C2 exon
AACTACAAAGCCTGCTCCACACCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'12-24,'12-19,19-24
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.009
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(20.0=56.2),PF0016016=Pro_isomerase=FE(26.8=100)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGGAAAAGGTGGAGAATCAA
R:
GGTGTGGAGCAGGCTTTGTAG
Band lengths:
68-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types