RnoEX0060018 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130369359-130380562:+
Coord C1 exon
chr8:130369359-130369386
Coord A exon
chr8:130370834-130370921
Coord C2 exon
chr8:130380533-130380562
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGAATGTGGTCTTTTGCAAAATGAAAAG
Seq A exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq C2 exon
AACTACAAAGCCTGCTCCACACTTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.110 C2=0.062
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(7.7=70.0)
A:
PF0016016=Pro_isomerase=FE(18.5=100)
C2:
PF0016016=Pro_isomerase=PD(4.7=60.0)
Main Inclusion Isoform:
ENSRNOT00000071152fB9689
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGTGGTCTTTTGCAAAATGA
R:
CAAGTGTGGAGCAGGCTTTGT
Band lengths:
53-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]