RnoEX0060019 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130370834-130380562:+
Coord C1 exon
chr8:130370834-130370921
Coord A exon
chr8:130377813-130377840
Coord C2 exon
chr8:130380533-130380562
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTAAAATTTGCAGAAA
3' ss Score
6.82
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq A exon
AAACAGTGTTACACCGTGCGCTCCAAAG
Seq C2 exon
AACTACAAAGCCTGCTCCACACTTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(18.5=100)
A:
PF0016016=Pro_isomerase=FE(7.0=100)
C2:
PF0016016=Pro_isomerase=PD(4.7=60.0)
Main Inclusion Isoform:
ENSRNOT00000071152fB9690
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCTCAAACATGACAGAGCGT
R:
CAAGTGTGGAGCAGGCTTTGT
Band lengths:
104-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]