HsaEX0043065 @ hg19
Exon Skipping
Gene
ENSG00000114857 | NKTR
Description
natural killer-tumor recognition sequence [Source:HGNC Symbol;Acc:7833]
Coordinates
chr3:42662921-42672067:+
Coord C1 exon
chr3:42662921-42663008
Coord A exon
chr3:42668692-42668719
Coord C2 exon
chr3:42672038-42672067
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTAAAATTTACAGAAA
3' ss Score
6.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTATCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq A exon
AAAGAGTGTTACACCGTGCGCTCCAAAG
Seq C2 exon
TACCACAAAGCCTGCTCCACACCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.8=100)
C2:
PF0016016=Pro_isomerase=PD(4.5=60.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCTCAAACATGACAGAGCGT
R:
CAGGTGTGGAGCAGGCTTTG
Band lengths:
104-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)