DreEX0050760 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20505514-20506672:-
Coord C1 exon
chr24:20506585-20506672
Coord A exon
chr24:20506016-20506041
Coord C2 exon
chr24:20505514-20505543
Length
26 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTAAAATTTGCAGAAA
3' ss Score
6.82
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCAT
Seq A exon
AAACTCTAGCATCCTGCTCTACCAAG
Seq C2 exon
AACTACAAAGACAGCGCCTCACCTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(7.1=100)
C2:
PF0016016=Pro_isomerase=PD(1.6=22.2)
Main Inclusion Isoform:
ENSDART00000127923fB4264
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTACTCTCAAACATGACAGAGCC
R:
CCATCTAGGTGAGGCGCTGTC
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]