BtaEX0024559 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15383778-15392766:+
Coord C1 exon
chr22:15383778-15383865
Coord A exon
chr22:15389823-15389850
Coord C2 exon
chr22:15392737-15392766
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTAAAATTTACAGAAA
3' ss Score
6.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq A exon
AAAGAGTGTTACACCGTGCGCTCCAAAG
Seq C2 exon
TACCACAAAACCTGCTCCACACCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795_MULTIEX1-3/4=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.8=100)
C2:
PF0016016=Pro_isomerase=PD(4.5=60.0)
Main Inclusion Isoform:
ENSBTAT00000030863fB4729
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTCTCAAACATGACAGAGCGT
R:
CAGGTGTGGAGCAGGTTTTGT
Band lengths:
104-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development