GgaEX0007290 @ galGal4
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1941393-1952427:+
Coord C1 exon
chr2:1941393-1941437
Coord A exon
chr2:1949896-1949923
Coord C2 exon
chr2:1952398-1952427
Length
28 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTAAAATTTACAGAAA
3' ss Score
6.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTAATGGAAAAGGAGGTGAATCTATTTATGGTGGCTATTTTAAAG
Seq A exon
AAACAGTGTTACATCGTGCGCTCCAAAG
Seq C2 exon
AACAACAAAACCCGCTCCTCATCTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282_MULTIEX1-3/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.1=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGGAAAAGGAGGTGAATCTATT
R:
CATCAAGATGAGGAGCGGGTT
Band lengths:
74-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]