MmuEX0031816 @ mm10
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121731478-121741743:+
Coord C1 exon
chr9:121731478-121731565
Coord A exon
chr9:121741122-121741151
Coord C2 exon
chr9:121741598-121741743
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGTTGATGTTTATTGTACAGAAC
3' ss Score
6.49
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq A exon
AACTACAAAGCCTGCTCCACACCTGGATGG
Seq C2 exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'19-25,'19-24,25-25
Average complexity
S
Mappability confidence:
100%=89=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.009 C2=0.027
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.0=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGGTTCCCAGTTTTTCA
R:
TGCATAAGGTCTGCTTGCAGC
Band lengths:
117-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types