GgaEX1002366 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr7:18126386-18127853:-
Coord C1 exon
chr7:18127766-18127853
Coord A exon
chr7:18126613-18126642
Coord C2 exon
chr7:18126386-18126525
Length
30 bp
Sequences
Splice sites
3' ss Seq
ACACCCACTGGAAACAACAGAAC
3' ss Score
-0.87
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGAAAGCTTTGCTGTAAAGCACAACAAAGAATTTCTTCTTTCAATGGCCAACCGAGGGAAGGATACAAATGGTTCACAGTTCTTTAT
Seq A exon
AACTACTAAACCTACACCTCACTTAGATGG
Seq C2 exon
ACATCATGTCGTCTTTGGACAAGTCATCTCAGGTCAGGAAGTGGTGAGAGAAATAGAAAACCAGAAAACAGATGCATCTAGTAAACCATATGCTGAAGTACGCATACTGAGTTGTGGAGAGTTGATTCCAAAATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.545 C2=0.646
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.0=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF074236=DUF1510=PU(31.6=89.6),PF105004=SR-25=PU(27.2=77.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTAAAGCACAACAAAGAA
R:
TCACCACTTCCTGACCTGAGA
Band lengths:
125-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]