DreEX6019942 @ danRer10
Exon Skipping
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3537686-3538264:+
Coord C1 exon
chr6:3537686-3537773
Coord A exon
chr6:3538005-3538034
Coord C2 exon
chr6:3538125-3538264
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTCCCTGACCATAGAAC
3' ss Score
8.29
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ATGAAAGTTTCTCAATGAAACATACCAAGGAGTTCCTGCTATCGATGGCCAACAGAGGGAAAGACACCAACGGCTCACAGTTCTTTAT
Seq A exon
AACTACTAAACCAACTCCTCACTTGGACGG
Seq C2 exon
AATTCATGTGGTGTTTGGTCAGGTGATCACCGGCCAGGATGTGATCCGGATGATCGAGAGTCAGAAGACGGATACCAACAGCAGACCGTATGCAGAGGTCAAAGTGCTCAACTGTGGGGAACTTGTTCCAAAATCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.295 A=0.364 C2=0.708
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.0=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF105004=SR-25=PU(27.2=64.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGACACCAACGGCTCACA
R:
GGTCTGCTGTTGGTATCCGTC
Band lengths:
117-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]