BtaEX0028111 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027789 | PPIG
Description
Bos taurus peptidylprolyl isomerase G (cyclophilin G) (PPIG), mRNA. [Source:RefSeq mRNA;Acc:NM_001109807]
Coordinates
chr2:26709542-26714769:-
Coord C1 exon
chr2:26714682-26714769
Coord A exon
chr2:26709775-26709804
Coord C2 exon
chr2:26709542-26709681
Length
30 bp
Sequences
Splice sites
3' ss Seq
TATTTGATGACTTCCAAAAGAAC
3' ss Score
-0.08
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
Exon sequences
Seq C1 exon
ATGAGAGTTTTGCTGTTAAACACAATAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGCTCACAGTTCTTCAT
Seq A exon
AACAACAAAACCAACTCCTCATTTAGATGG
Seq C2 exon
GCATCATGTGGTTTTTGGGCAAGTGATTTCTGGTCAAGAAGTTGTGAGAGAAATAGAAAACCAGAAAACAGATGCAGCTAGCAAACCATTTGCTGAGGTACGGATACTCAGTTGTGGAGAGCTAGTTCCAAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027789-'9-13,'9-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.545 C2=0.604
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.0=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAACAGAGGGAAGGAT
R:
GCTAGCTGCATCTGTTTTCTGG
Band lengths:
126-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development