HsaEX6016598 @ hg38
Exon Skipping
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169608671-169614724:+
Coord C1 exon
chr2:169608671-169608758
Coord A exon
chr2:169614464-169614493
Coord C2 exon
chr2:169614585-169614724
Length
30 bp
Sequences
Splice sites
3' ss Seq
TATCTGATGATTTCCAAAAGAAC
3' ss Score
1.79
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACGAGAGTTTCGCTGTTAAACACAACAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGTTCACAGTTCTTCAT
Seq A exon
AACAACGAAACCAACTCCTCATTTAGATGG
Seq C2 exon
GCATCATGTTGTTTTTGGACAAGTAATCTCTGGTCAAGAAGTTGTAAGAGAGATTGAAAACCAGAAAACAGATGCAGCTAGCAAACCGTTTGCGGAGGTACGGATACTCAGTTGTGGAGAGCTGATTCCCAAATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-'23-26,'23-25,28-26
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.495 C2=0.502
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100),PF095075=CDC27=PU(8.5=60.0)
A:
PF0016016=Pro_isomerase=FE(6.0=100),PF095075=CDC27=FE(4.7=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3),PF095075=CDC27=FE(22.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAACAGAGGGAAGGAT
R:
GCTAGCTGCATCTGTTTTCTGG
Band lengths:
126-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains