MmuEX0036568 @ mm9
Exon Skipping
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69572348-69574185:+
Coord C1 exon
chr2:69572348-69572435
Coord A exon
chr2:69573925-69573954
Coord C2 exon
chr2:69574046-69574185
Length
30 bp
Sequences
Splice sites
3' ss Seq
TATCTGATGAATCCCAAAAGAAC
3' ss Score
0.37
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
Exon sequences
Seq C1 exon
ATGAGAGTTTTGCTGTTAAACACAACAAAGAGTTTCTCTTATCAATGGCCAACAGAGGGAAGGATACAAATGGCTCTCAGTTCTTTAT
Seq A exon
AACAACAAAACCAACTCCTCATTTAGATGG
Seq C2 exon
GCATCATGTTGTTTTTGGGCAAGTGATCTCTGGTCAGGAAGTTGTGAGAGAGATTGAAAACCAGAAAACAGATGCCGCTAGCAAACCATTTGCTGAAGTTCGGATACTCAGTTGCGGAGAGCTGATTCCAAAGTCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.529 C2=0.521
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.0=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAACAGAGGGAAGGAT
R:
AGCGGCATCTGTTTTCTGGTT
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: