RnoEX6017317 @ rn6
Exon Skipping
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55971314-55972900:+
Coord C1 exon
chr3:55971314-55971401
Coord A exon
chr3:55972637-55972666
Coord C2 exon
chr3:55972761-55972900
Length
30 bp
Sequences
Splice sites
3' ss Seq
TATCTGATGACTTCCAAAAGAAC
3' ss Score
0.61
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ATGAGAGTTTTGCTGTTAAACACAACAAAGAGTTTCTCTTATCAATGGCCAACAGAGGGAAGGATACAAATGGCTCTCAGTTCTTTAT
Seq A exon
AACAACGAAACCAACTCCTCATCTAGATGG
Seq C2 exon
GCATCATGTTGTCTTTGGGCAAGTGATCTCTGGTCAGGAAGTTGTGAGAGAGATCGAAAACCAGAAAACAGATGCTGCTAGCAAACCGTTTGCTGAGGTTCGGATACTCAGTTGTGGAGAGCTGGTTCCCAAGTCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.364 C2=0.403
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.0=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=83.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAACAGAGGGAAGGAT
R:
GCTAGCAGCATCTGTTTTCTGG
Band lengths:
126-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]