MmuEX0031816 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121640596-121650861:+
Coord C1 exon
chr9:121640596-121640683
Coord A exon
chr9:121650240-121650269
Coord C2 exon
chr9:121650716-121650861
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGTTGATGTTTATTGTACAGAAC
3' ss Score
6.49
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq A exon
AACTACAAAGCCTGCTCCACACCTGGATGG
Seq C2 exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525_MULTIEX3-2/3=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=PD(3.8=50.0)
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAATGGTTCCCAGTTTTTCA
R:
TGCATAAGGTCTGCTTGCAGC
Band lengths:
117-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: