DreEX0050753 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20505229-20506672:-
Coord C1 exon
chr24:20506585-20506672
Coord A exon
chr24:20505514-20505543
Coord C2 exon
chr24:20505229-20505374
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTGCCTGACTACAGAAC
3' ss Score
5.37
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
ATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCAT
Seq A exon
AACTACAAAGACAGCGCCTCACCTAGATGG
Seq C2 exon
AGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097-'11-11,'11-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=PD(1.6=22.2)
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCAAAGACACAAATGGC
R:
TCTGCTGGCTGAGTCAGTCTT
Band lengths:
120-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]