GgaEX1039787 @ galGal4
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1942932-1953415:+
Coord C1 exon
chr2:1942932-1943019
Coord A exon
chr2:1952398-1952427
Coord C2 exon
chr2:1953270-1953415
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTGTTTGTCAAACAGAAC
3' ss Score
8.73
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAACCGAGGGAAACATACCAATGGTTCCCAATTTTTCAT
Seq A exon
AACAACAAAACCCGCTCCTCATCTTGATGG
Seq C2 exon
CGTACACGTTGTCTTTGGACTGGTTATTTCTGGTTTTGAAGTAATAGAACAAATAGAAAATCTGAAAACTGATACTGCCAGTAGACCCTATGCAGATGTACGAGTTATTGACTGTGGGGTGCTTGTTACAAAACCTGCAAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'10-16,'10-15,12-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.5=100)
A:
PF0016016=Pro_isomerase=FE(6.0=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGGGAAACATACCAATGGT
R:
AGGGTCTACTGGCAGTATCAGT
Band lengths:
125-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]