RnoEX6038331 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130370834-130381182:+
Coord C1 exon
chr8:130370834-130370921
Coord A exon
chr8:130380533-130380562
Coord C2 exon
chr8:130381037-130381182
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGTTGATGTGTATTGTACAGAAC
3' ss Score
6.06
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq A exon
AACTACAAAGCCTGCTCCACACTTGGATGG
Seq C2 exon
GGTTCATGTTGTCTTTGGACTGGTTATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACGGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGAGTGCTTGCCACAAAGTTGACAAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-'7-9,'7-8,9-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.062 C2=0.018
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(18.5=100)
A:
PF0016016=Pro_isomerase=PD(4.7=60.0)
C2:
PF0016016=Pro_isomerase=PD(25.5=80.0),PF105004=SR-25=PU(19.5=52.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAATCGAGGGAAACATACCA
R:
GCTTGCAGCATCCGTTTTCAG
Band lengths:
124-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]