BtaEX0024560 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15381955-15393349:+
Coord C1 exon
chr22:15381955-15381999
Coord A exon
chr22:15392737-15392766
Coord C2 exon
chr22:15393204-15393349
Length
30 bp
Sequences
Splice sites
3' ss Seq
TGTTGATATTTGTTGCACAGTAC
3' ss Score
3.94
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGTTATTTTAAAG
Seq A exon
TACCACAAAACCTGCTCCACACCTGGATGG
Seq C2 exon
GGTGCATGTTGTCTTTGGACTAGTTATTTCTGGTTTTGAAGTGATCGAACAAATTGAAAATCTGAAAACTGATGCTGCAAGTAGACCGTATGCAGATGTACGAGTTATTGACTGCGGGGTGCTTGCCACAAAGTCAGCAAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.048
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
PF0016016=Pro_isomerase=PD(4.5=60.0)
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(21.1=56.0)
Main Skipping Isoform:
ENSBTAT00000030863fB4728
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAGAATCAATTTATGGTGGT
R:
GCATACGGTCTACTTGCAGCA
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development