BtaINT0102034 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15381955-15383865:+
Coord C1 exon
chr22:15381955-15381999
Coord A exon
chr22:15382000-15383777
Coord C2 exon
chr22:15383778-15383865
Length
1778 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGTTATTTTAAAG
Seq A exon
GTAAGGCTTAATATTTTATGGTCTTTTGTCTCATTTCTGATATAAAGCAAGTTTGATCATGTACTTTTAATGAGAAGAGGTTTACTTATAGTTCACTTTTTGCATGAAACTAATGCTGCATGAAAATACTTTATTTGCATGAACTTGGGGATAAATTATATTGTAATATATAACTTTTAATTGACAAGATTAATTAAGGCTAACTTTATGGTTAAACATGACTTTCAGCATGGAGGTTAGGCAACTATATACATGAAAACTCCTATCTTCCTGCCTAAAACTGTCAACATATTCTTTTGTTTATAGAGAATGTGGTCTTTTGCAAAATGAAAAGGTAAGAGAACGAAGCTCAGTAACACAAACTCCAACTCTTTTCCCTTGCACCCTTCCTAATAAATTTATGGAGAGTCTGGGTCAGGTTGTGACTGGATTTCTTATATTGCTTGAAGACTTGGAAAACTCTGTATACTATTTCATACATGCACCTGTATCTTTTTTTCTTTTTCCAATGGGTTATTATTTCCATGTCAGGGTGAAGAGTCTAGTTTTTTTTTTCTTTTCCCCTCTAAGCCAAACAGTGTCTTTGAATAAAAGTTGGTATTTCTTCCTTTCTCAAAGGTTTGTATGTTTTCTTTTGTATAGTAGAACTATATGATTGTGTTTTATTCCTACAGTAGTATTTGCATAAATCTAACTATTACACTTGCCCCAAAAAGCCTTAGAAAAGTCAGTTGCAGAAATTTATAATGGGATCCAGTATTACTAGGTTTTAATGCCATGATAGCTTCAGTGTTATAATAGTCTTTTATATTTCTTTTGGGGAAAAATGGATTACTACTCTTTTTCAGAAGCCTGTTCCCAAGGTAATCTTTTTTTTGTTTTTGTTTTTGAAGTTTTCTGTGTTTCTGTTTGTTCAAAAGAAAGATTTGTTTGTATCAATGTTAAAAGGAAACTTAAATTAGTTTTCAGGATACTTCTGCTGGAATTAAATCCGTCTCTAAGTGATCTTTATGACAGAGGTTTTCCTTTGAACTAGTAGCAAACAGCTCTTGAGCTGATTCCATTAGCATGTAGCAATTTGAAATTAATACTGTAGGCCACTTTAACATTGTTGTTGCCTGTGGCGGATATTTGTATGTATATCTTAAAATTGAATCTTGCCATTTAAATTTTTGTATTTGCAGGGCTTTCTTCCTTAGATAGTTTTTGATCCTATTGATTAGAATCTACATACTTGATTTAATTAGGCATGTCTCTAAACTTACTGTAATATTTTGGTTAGGGTTGGTTTCATCATCTAGCAACAATTTGATTGAGTAATAAATTTACCATATAGAAATTAAGCACATAAGAGGATTATTAAAGCTCCCATGAATGGTGCATTATGCAGGATGATTGGAAATTTGGAAGAAACGAGCTCTACTATATTTTTTTTTTTTAAATTTTCTTGGTAGTTTTCCCTGAAAGTTAATAGTTTAAATATCATTTAGCCAAAGTCTGTTGGTACTAAAAGTGACTGTTCTAAGGCTGTTTGTATAAAGTGTTAAATATATGTTCTTTTTCTCAAAGCTAAGTAGTAAATAAGTAGTATCTGGGTTGTTTTTTTTTTTATGCTTTTGTTATTTGGTTAGTTAAAAGAATTTTTTTCGAAATAGTCACGTATCTGTACTGACCAGAAGAGGAATTTCATCCTTTGCTTTCTATTTACTGCTTTGAACATTACACGTTAAAAGTGGCTTATAATTGGAGACTGACAAATTTGTGTTTTCTTCAAACAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795:ENSBTAT00000030863:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]