MmuINT0108810 @ mm10
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121729636-121731565:+
Coord C1 exon
chr9:121729636-121729680
Coord A exon
chr9:121729681-121731477
Coord C2 exon
chr9:121731478-121731565
Length
1797 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
Seq A exon
GTAAGGCCTAGTATTTTGTGTTCTTTTGTTTTTGTTTTTGTTTCAGTTCTGATATAAAGCAAGTTTGGTCGCATACTTTAATGAGAAGAGGTTTACTTGTAGTTCACGTTTGCATGAAACTAATGCTGCATGAAAATACTTTATTTGCATGAGCTTGGGGATAAATTATATTGTAATATATAACTTTTAATTGACAAGATTAATTAAGGCTAACTTTAAGGTTAAACATGACTTTCAGCATGGAGGTTAGGCAACTATATACATGAAAACTCCTATCTTCCTGCCTAAAACTGTCAACATATTCTTTTGTTTATAGAGAATGTGGTCTTTTGCAAAATGAAAAGGTAAGAGAACGAAGCTCAGTAACACAAACTCCACTCTGCTCCCTTGTGCCCTCCTAATAAATCCATGGACAGTCTGGTCAGGTTGTGCCTGGATTTCTGTGTTGTTTGAAGACTTGGAAAATCTCTGTGATTTCATACATGCATTTGTGCCTTTGTTTCTTTACAATGGGTCCTTAGTTCTACCTCAGAGAAAAAAGAAGCTAGTTGTGGTTTTTGTTCCCTTAAACCAAGCAATTTCTTTGAATACAAATTGGTATTTTTTTCCTTTCTCAAAGGTTTGTATATTTTCTTTTGTGTACTAGAACTATACGGTTATATTTTATTCCTACAGTAGTAACATTTCATTAAGTCTAACTATTGCACTTCCCCAAAAAGCCTTAGAAAAGTCAGTTGCAGGAATTTATGGTGGGCTCCAGCATTGCTGGGCTTGAATGCCATCAAAGCTTTAGTGTATAATGGTCTTTTATATTTCCTTTGGGGAAACTGGATCACTATTTTTCAGAAGCCTGTCCCCAAGGTAATCATCTTTTTTTTTTTTTTTTAAGTTCTATGTTTCTGTTCTAAAGAAAGATTTGTTTGTATGAATGTAGAAGGAAATTTGGCTTTAAAGATACTTCTCTCTTCCAAATATTTACCAGGCCTGACCCTGCTTAGCTTCTGGTATTAGAGGAGATCAGGCACATTGGATGATATGGCTGTCCAGTCTTAAAGATATTTCTGCTGGATTAGAGCCATCACTAAGTGATAGTGATGATGGTTTTCCGCCTTTCTAGCTGGTTGTGATGGCGTGTAGCAACTTGCACTTAGTGCGGTGGGTCGCTTTAATGTTGCTATTCTCTGTGGCAGATGCTTTTTTAATCTTAAAATATTTTTTAAAATGTTAATTATACAATATTCTTCCTTGGGTAATTTTGTGATCCTACTGATACTTGATTTAATTTAATGTTTTCCTGAAACTAAATATATGTAATATTTTTTTCTCATAGACCAGCTTGACTTCAGTGGAATAATTTCCCATACAAACATTAAGCATTCAAGATTAGACTTATTAAAACTCACCTATGTATATAGTTCATGTGTCAGGCTAATTGGAAACTTGAAGGCAATACATTTTACTGTAGAGATTTTTCTAAAAGTTTCTTGGCAAGACTTCCTGGAGAGTCAGTAGTTTGTGTATCATTTAGCCAAGTGTGTTGCTGCTGGAAGTGACTGTTCTAAGGCTGTTTGTACAAAGTGTTAAATACCTGCTCTTTCCTCAAGGCTTTAATTAGTATCTTTTCGGCCTTTTTTGTGCTTTTGTTATTCAATTAGTTAATTTTTTTTTCTACATATTGCCAAATATCTTACTGACCAGAAGAGGAGTTTCATCCTTTGCTTTCAATTTAGTACTTGAGCATTACTTTAAAAGCTTCTTATAATTGGAGACTAACAAATTTGTGTTTTCTTCAAACAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525:ENSMUST00000035112:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(20.0=56.2),PF0016016=Pro_isomerase=FE(26.8=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types