DreINT0104759 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20506585-20507820:-
Coord C1 exon
chr24:20507776-20507820
Coord A exon
chr24:20506673-20507775
Coord C2 exon
chr24:20506585-20506672
Length
1103 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TACTTGTCTGTTTTCAACAGATG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GCAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAG
Seq A exon
GTAAGCCATCTTCAGATCGGGTTTGGTTTGAATCAAGCACTCTGTAACCTTAGCAAAGTCACTTAATTTGTGTTTTAACAGCTTTTGCATGACATTTTTGATTGAGGATCTCAGTTCTGTGCATGAATTTCATTCATTCAGTTCTTTATCCTGATCTCACTGCAGCTGTAAATGTTGGCTCTGTTTTATTCCTGTGATCATATAATGGTCTTCTTTTTGAGTCAGCATGGAGAATAAGGGCTATTTATTTATTTAAAGGTCCAGTCTTCTTGCCTAAAATTTTCAACATATTCTTTTATTTATAGAGATTGTGGTCTTTTGCAAAATGAAAAGGTAAGAGATGTACACAGTGCAGTAACACAATGTAGACTAAACATTTCCCATTCCAATCCCTTATGCCAACATTGACAAAAACGTCCACACCGCAGAGTGTGCTCATGGATATGTGGACCTTGAAATTGATTTGGTTGACTGACTTTTGTTTTCATTCCTTTGTTTTTTATAATTTCCTTTATTTTTCCAGGATGGCTTGTCATGCACTACAGCACCCTTCGAAATAATACAGTCATTAAAAGGATTGGTTGAAGCAAAGATTGTCATTTTAATCATATCTCATGTTGTCCCAAACTTGTTATTTGGTGGTACAACAAAATAAACTTAAATAATCTTTGGTGCAGACCATTTCAAGCAGTTGCTTAAATAGAGCTTTTGCATTTTTTAAAACTTAAAGGCTCAAGCAGTTGCATGGAAAAACAAGGTGATTATCAATTTCACCATTTGTGTTCCATGACAGAAAGTAAATCACTAAGGTTGGTATGGCATGAGAAATTACATAATTGTAGGTTAACTATTCCTTCATGTAATTTGGCCCAACTTGACAAAACAGTTCTAATGTAAACAGTTGTTACTATAGTAGAGCTCAGGGTAGAACATCTCTGCTTTTGTACTGAAGAGCATGAGAAACACTCAGAAGCAGAATAAAAAGCATCACTTTTGTCAGGTGTTCATAAACATCTCTTTGCCTGTCTCTATCCTTCTCCTTAACACTTTTAGAAGTCGCCAAGTATTAAGTGTCGTTCTCTGTACTTGTCTGTTTTCAACAG
Seq C2 exon
ATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]