DreEX0050758 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20506585-20507820:-
Coord C1 exon
chr24:20507776-20507820
Coord A exon
chr24:20507443-20507470
Coord C2 exon
chr24:20506585-20506672
Length
28 bp
Sequences
Splice sites
3' ss Seq
ACATATTCTTTTATTTATAGAGA
3' ss Score
6.55
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCAATGGAAGAGGGGGAGAATCTATATTTGGTGGTTTCTTTGAAG
Seq A exon
AGATTGTGGTCTTTTGCAAAATGAAAAG
Seq C2 exon
ATGAGAACTTTACTCTCAAACATGACAGAGCCTTCCTCTTGTCGATGGCCAACCGTGGCAAAGACACAAATGGCTCCCAGTTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100)
A:
PF0016016=Pro_isomerase=PD(7.4=70.0)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGAAGAGGGGGAGAAT
R:
GCCATTTGTGTCTTTGCCACG
Band lengths:
119-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]