MmuEX0031809 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121638754-121640683:+
Coord C1 exon
chr9:121638754-121638798
Coord A exon
chr9:121639115-121639142
Coord C2 exon
chr9:121640596-121640683
Length
28 bp
Sequences
Splice sites
3' ss Seq
ACATATTCTTTTGTTTATAGAGA
3' ss Score
6.58
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
Seq A exon
AGAATGTGGTCTTTTGCAAAATGAAAAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
PF0016016=Pro_isomerase=PD(7.4=70.0)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGAGAATCAATTTATGGTGGA
R:
GAACCATTGGTATGTTTCCCTCGA
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: