RnoEX0060017 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130369005-130370921:+
Coord C1 exon
chr8:130369005-130369049
Coord A exon
chr8:130369359-130369386
Coord C2 exon
chr8:130370834-130370921
Length
28 bp
Sequences
Splice sites
3' ss Seq
ACATATTCTTTTGTTTATAGAGA
3' ss Score
6.58
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
Seq A exon
AGAATGTGGTCTTTTGCAAAATGAAAAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.5=100)
A:
PF0016016=Pro_isomerase=PD(7.7=70.0)
C2:
PF0016016=Pro_isomerase=FE(18.5=100)
Main Inclusion Isoform:
ENSRNOT00000071152fB9689
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGAGAATCAATTTATGGTGGA
R:
GAACCATTGGTATGTTTCCCTCGA
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]