BtaEX0024557 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15381955-15383865:+
Coord C1 exon
chr22:15381955-15381999
Coord A exon
chr22:15382306-15382333
Coord C2 exon
chr22:15383778-15383865
Length
28 bp
Sequences
Splice sites
3' ss Seq
ACATATTCTTTTGTTTATAGAGA
3' ss Score
6.58
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGTTATTTTAAAG
Seq A exon
AGAATGTGGTCTTTTGCAAAATGAAAAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
PF0016016=Pro_isomerase=PD(7.4=70.0)
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Inclusion Isoform:
ENSBTAT00000030863fB4728
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGAGAATCAATTTATGGTGGT
R:
GAACCATTGGTATGTTTCCCTCGA
Band lengths:
112-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development