BtaEX0024558 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15381955-15392766:+
Coord C1 exon
chr22:15381955-15381999
Coord A exon
chr22:15383778-15383865
Coord C2 exon
chr22:15392737-15392766
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGTTATTTTAAAG
Seq A exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
Seq C2 exon
TACCACAAAACCTGCTCCACACCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795_MULTIEX1-2/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
PF0016016=Pro_isomerase=FE(17.5=100)
C2:
PF0016016=Pro_isomerase=PD(4.5=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATGGAAAAGGTGGAGAATCAA
R:
AGGTGTGGAGCAGGTTTTGTG
Band lengths:
69-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development