MmuINT0108810 @ mm9
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121638754-121640683:+
Coord C1 exon
chr9:121638754-121638798
Coord A exon
chr9:121638799-121640595
Coord C2 exon
chr9:121640596-121640683
Length
1797 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTGTGTTTTCTTCAAACAGATG
3' ss Score
10.35
Exon sequences
Seq C1 exon
GTAATGGAAAAGGTGGAGAATCAATTTATGGTGGATACTTTAAAG
Seq A exon
GTAAGGCCTAGTATTTTGTGTTCTTTTGTTTTTGTTTTTGTTTCAGTTCTGATATAAAGCAAGTTTGGTCGCATACTTTAATGAGAAGAGGTTTACTTGTAGTTCACGTTTGCATGAAACTAATGCTGCATGAAAATACTTTATTTGCATGAGCTTGGGGATAAATTATATTGTAATATATAACTTTTAATTGACAAGATTAATTAAGGCTAACTTTAAGGTTAAACATGACTTTCAGCATGGAGGTTAGGCAACTATATACATGAAAACTCCTATCTTCCTGCCTAAAACTGTCAACATATTCTTTTGTTTATAGAGAATGTGGTCTTTTGCAAAATGAAAAGGTAAGAGAACGAAGCTCAGTAACACAAACTCCACTCTGCTCCCTTGTGCCCTCCTAATAAATCCATGGACAGTCTGGTCAGGTTGTGCCTGGATTTCTGTGTTGTTTGAAGACTTGGAAAATCTCTGTGATTTCATACATGCATTTGTGCCTTTGTTTCTTTACAATGGGTCCTTAGTTCTACCTCAGAGAAAAAAGAAGCTAGTTGTGGTTTTTGTTCCCTTAAACCAAGCAATTTCTTTGAATACAAATTGGTATTTTTTTCCTTTCTCAAAGGTTTGTATATTTTCTTTTGTGTACTAGAACTATACGGTTATATTTTATTCCTACAGTAGTAACATTTCATTAAGTCTAACTATTGCACTTCCCCAAAAAGCCTTAGAAAAGTCAGTTGCAGGAATTTATGGTGGGCTCCAGCATTGCTGGGCTTGAATGCCATCAAAGCTTTAGTGTATAATGGTCTTTTATATTTCCTTTGGGGAAACTGGATCACTATTTTTCAGAAGCCTGTCCCCAAGGTAATCATCTTTTTTTTTTTTTTTTAAGTTCTATGTTTCTGTTCTAAAGAAAGATTTGTTTGTATGAATGTAGAAGGAAATTTGGCTTTAAAGATACTTCTCTCTTCCAAATATTTACCAGGCCTGACCCTGCTTAGCTTCTGGTATTAGAGGAGATCAGGCACATTGGATGATATGGCTGTCCAGTCTTAAAGATATTTCTGCTGGATTAGAGCCATCACTAAGTGATAGTGATGATGGTTTTCCGCCTTTCTAGCTGGTTGTGATGGCGTGTAGCAACTTGCACTTAGTGCGGTGGGTCGCTTTAATGTTGCTATTCTCTGTGGCAGATGCTTTTTTAATCTTAAAATATTTTTTAAAATGTTAATTATACAATATTCTTCCTTGGGTAATTTTGTGATCCTACTGATACTTGATTTAATTTAATGTTTTCCTGAAACTAAATATATGTAATATTTTTTTCTCATAGACCAGCTTGACTTCAGTGGAATAATTTCCCATACAAACATTAAGCATTCAAGATTAGACTTATTAAAACTCACCTATGTATATAGTTCATGTGTCAGGCTAATTGGAAACTTGAAGGCAATACATTTTACTGTAGAGATTTTTCTAAAAGTTTCTTGGCAAGACTTCCTGGAGAGTCAGTAGTTTGTGTATCATTTAGCCAAGTGTGTTGCTGCTGGAAGTGACTGTTCTAAGGCTGTTTGTACAAAGTGTTAAATACCTGCTCTTTCCTCAAGGCTTTAATTAGTATCTTTTCGGCCTTTTTTGTGCTTTTGTTATTCAATTAGTTAATTTTTTTTTCTACATATTGCCAAATATCTTACTGACCAGAAGAGGAGTTTCATCCTTTGCTTTCAATTTAGTACTTGAGCATTACTTTAAAAGCTTCTTATAATTGGAGACTAACAAATTTGTGTTTTCTTCAAACAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAATCGAGGGAAACATACCAATGGTTCCCAGTTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-Nktr:NM_010918:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: