GgaINT0091026 @ galGal3
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1844488-1846114:+
Coord C1 exon
chr2:1844488-1844532
Coord A exon
chr2:1844533-1846026
Coord C2 exon
chr2:1846027-1846114
Length
1494 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CATATTTTTTCTTCAAACAGATG
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTAATGGAAAAGGAGGTGAATCTATTTATGGTGGCTATTTTAAAG
Seq A exon
GTAAGAGCAAGTATATCTTCACAGATTCTCAATTCCGTTCTGAAAAGTCTTGATTCCCAAGATACTTAATGAAAAGAGGTCTACTTATAGATCACCTTTTGCATGAAACTAATATTGCATGAGAATTATTTTTATATGCATGACTTTCAGATAGTTTTTATTTTTGTAATATTTAACTTTAACTGACAATTAATTAAGGCTAACATTATTGGTTAAACATGACTTTCAGCATGGAGGTTAGGCAACTTTATTCATGAATAAACTCCTATCTTCCTGCCTAAAACTGTCAACATATTCTTTTGTTTATAGAGAATGTGGTCTTTTGCAAAATGAAAAGGTAAGAGACAAAAGCTCAGTAACACAAATTCAAACTCTGTTCCCTTGTACCTTCCCTAGTAAATACATAGACAACTGATACATCCGTTTGTAGATGGATATCTGTGTTGCTTGGAGAAATGAGGAGTTCTGTGTCTAACCTTTCTGAGGGTTAATGACTTATTCTGAGAGAACACTGGCATAATTTTCAGTTCTAAACAATTTTTTTTCTTCTTTTGTTAACGTCCCTTTTCTCCCCTTCCCTATTGAAGGTTTGTATTTTTGGTGTTCCTTTTGAAGTGTTTGTTTATATGCTACACGAGTTGCTTTCCTTGCAAAGAGTTTTTAAATGTATATTTACCTCTTTTTAAAAACAGTTGTTGGAAGGAAAATGGTGAGTTTATGAAGTATTATTTAAGGATATAACATTCTTTCTTGCTACAACAACAAAAACACTGCTAGTTACTATGGTTTTGAAGTGTTAATAAGATGTTCCTAGGGTTTGTCTCTAAAGGGTGCACTAAAGGTGGTAAGTTCTAAACATGCAGTATTGTGCTTTGATATATAATCTTAAAAATAACAGCTTCTTATGCCCAAACTGTAATTCTTACCTTTGAAAAGGAGCTTCAGAACAATATCTGGTTTTGTACTATGCCGTGCAGCCAGAAGTGCTCTTTAATTCCCTGGAATATGAAATGCATGTTTAGTTCAGTCTTAATTGCTTTTACATTTAGGTTGAAGGAAGAATGTATTCTTTAGTTCCTCTTTCTGGTATTCAGGGTTTTGCTTATTCCTGTATGTTTTGAGGCATCCACCTTGGAATGGATGGGTTGCTCTCGTAACATTCCGTGCCAGGGAAATGGCCATTTCACTGGGTGCCCATAAATAGCAGTGTGGTGTACTTGAGGGCTTGTTTTGGGATCACCTTTACATTCATTTTCATCAGAGATGTCCACGGCATTGCTGTAACTTTCTGTATAAAAGTATGCTTTCTGTCTCATGAGTGTTTCTGTTGTAACTTTTGAGGGGCTCAATTAGATTTCTGTTCTATTTCCAACCTGTTCAAGTTTCTTTAGCAGCGGAAGAATTTCTCCTTGTAGTACCCATAAGTTACTAAGAAAATCTGACTTGCATTCCTTGTCAGGGAAAATCTGACAAACATATTTTTTCTTCAAACAG
Seq C2 exon
ATGAAAACTTTATTCTCAAACATGACAGAGCGTTCCTTTTGTCAATGGCAAACCGAGGGAAACATACCAATGGTTCCCAATTTTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(16.0=100),PF132061=VSG_B=PD(19.7=75.0)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(17.5=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]