RnoEX0060014 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130380533-130382189:+
Coord C1 exon
chr8:130380533-130380562
Coord A exon
chr8:130381037-130381182
Coord C2 exon
chr8:130381967-130382189
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGAATTTGTATTATGACAGGGT
3' ss Score
4.9
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AACTACAAAGCCTGCTCCACACTTGGATGG
Seq A exon
GGTTCATGTTGTCTTTGGACTGGTTATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACGGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGAGTGCTTGCCACAAAGTTGACAAAAGATG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACACATTCAGAAGACTCGGACTCTTCTTCCAACTCCTCTTCCTCTTCAGAGTCATCCTCAGAAAGCGAAGTTGAACGAGAGAGAATCAGAAGGAGGAGACATAAGAGGAGGCCAAAAGTCAGACATACTAAAAAGAGACGGAAAGAGATGAGCGGTTCAGAGGAACTGAGAAGGAAGCGCACAGTGAGCCCTGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-'9-10,'9-9,10-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.018 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(4.7=60.0)
A:
PF0016016=Pro_isomerase=PD(25.5=80.0),PF105004=SR-25=PU(19.5=52.0)
C2:
PF105004=SR-25=FE(55.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAAAGCCTGCTCCACAC
R:
CTCACTGTGCGCTTCCTTCTC
Band lengths:
243-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]