MmuEX6069972 @ mm10
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121741122-121742718:+
Coord C1 exon
chr9:121741122-121741151
Coord A exon
chr9:121741598-121741743
Coord C2 exon
chr9:121742565-121742718
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGGATTTATATTATGACAGGGT
3' ss Score
3.35
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AACTACAAAGCCTGCTCCACACCTGGATGG
Seq A exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACCTGTTCAGAAGGCTCGGACTCTTCTTCCCGTTCCTCTTCCTCTTCAGAGTCCTCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGACATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'25-26,'25-25,28-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.027 C2=0.960
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.9=100)
A:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
C2:
PF105004=SR-25=FE(55.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAAGCCTGCTCCACACC
R:
TGTCTGACTTTTGGCCTCCTC
Band lengths:
179-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types