GgaEX0007291 @ galGal4
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1952398-1954682:+
Coord C1 exon
chr2:1952398-1952427
Coord A exon
chr2:1953270-1953415
Coord C2 exon
chr2:1954460-1954682
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAACTGTTTTATTTCTGCAGCGT
3' ss Score
8.8
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
AACAACAAAACCCGCTCCTCATCTTGATGG
Seq A exon
CGTACACGTTGTCTTTGGACTGGTTATTTCTGGTTTTGAAGTAATAGAACAAATAGAAAATCTGAAAACTGATACTGCCAGTAGACCCTATGCAGATGTACGAGTTATTGACTGTGGGGTGCTTGTTACAAAACCTGCAAAAGACG
Seq C2 exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.960
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
PF0016016=Pro_isomerase=PD(24.1=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAAAACCCGCTCCTCA
R:
TTTGAGGCTCGCTTGCTTCTC
Band lengths:
244-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]