DreEX6094762 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20504510-20505543:-
Coord C1 exon
chr24:20505514-20505543
Coord A exon
chr24:20505229-20505374
Coord C2 exon
chr24:20504510-20504711
Length
146 bp
Sequences
Splice sites
3' ss Seq
GAACTGTTGGTCTATTTTAGAGT
3' ss Score
8.49
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
AACTACAAAGACAGCGCCTCACCTAGATGG
Seq A exon
AGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACG
Seq C2 exon
TTCTTCAAGGCAAACTGAGAAAAGCATTCTATTCTGAGGATGACTCTCAGAGTTCCTCTGAGTCTTTATCTGAGCATTCCTCACTAGAAGAAGAGCCTACATCTCGAAAGAGGAAAAAAAGCTCAAAGAGTAAACATGCAAAGAGAAGCAGAAGAGAGGCAAAGAAGGACAGAGAGACTGTTAAAACTGCAGGACCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.853
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(1.6=22.2)
A:
PF0016016=Pro_isomerase=PD(24.1=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGACAGCGCCTCACCTAG
R:
CTTGCGGGTCCTGCAGTTTTA
Band lengths:
227-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]