MmuEX6069972 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121650240-121651836:+
Coord C1 exon
chr9:121650240-121650269
Coord A exon
chr9:121650716-121650861
Coord C2 exon
chr9:121651683-121651836
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGGATTTATATTATGACAGGGT
3' ss Score
3.35
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AACTACAAAGCCTGCTCCACACCTGGATGG
Seq A exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACCTGTTCAGAAGGCTCGGACTCTTCTTCCCGTTCCTCTTCCTCTTCAGAGTCCTCCTCAGAGAGTGAAGTTGAGCGAGAGACAATCAGAAGGAGAAGACATAAGAGGAGGCCAAAAGTCAGACATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'13-13,'13-11,14-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.960
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(3.8=50.0)
A:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
C2:
PF105004=SR-25=FE(55.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAAAGCCTGCTCCACACC
R:
TGTCTGACTTTTGGCCTCCTC
Band lengths:
179-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: