HsaEX6055337 @ hg38
Exon Skipping
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42630546-42632823:+
Coord C1 exon
chr3:42630546-42630575
Coord A exon
chr3:42631171-42631316
Coord C2 exon
chr3:42632601-42632823
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGAATTTGTATTATGACAGGGT
3' ss Score
4.9
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TACCACAAAGCCTGCTCCACACCTGGATGG
Seq A exon
GGTGCATGTAGTCTTTGGACTGGTTATTTCTGGTTTTGAAGTAATCGAACAAATTGAAAATCTGAAGACCGATGCTGCAAGCAGACCATATGCAGATGTGCGAGTTATTGACTGTGGAGTACTTGCCACAAAATCAATAAAAGATG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAACCAACTCATTCAGAAGGCTCGGATTCCTCTTCCAATTCCTCCTCTTCTTCAGAATCATCTTCAGAAAGTGAACTTGAACATGAGAGAAGCAGAAGGAGGAAACATAAGAGGAGGCCAAAAGTTAAACGTTCTAAAAAGAGGCGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGGAATAAACATGCAATGAACCCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-'27-26,'27-24,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(6.0=100)
A:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(17.3=56.0)
C2:
PF105004=SR-25=FE(45.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACAAAGCCTGCTCCACA
R:
CCTTTTGGGTTCATTGCATGT
Band lengths:
253-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains