BtaEX6093614 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15392737-15394518:+
Coord C1 exon
chr22:15392737-15392766
Coord A exon
chr22:15393204-15393349
Coord C2 exon
chr22:15394296-15394518
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGAATTTGTATTGTGACAGGGT
3' ss Score
5.86
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
TACCACAAAACCTGCTCCACACCTGGATGG
Seq A exon
GGTGCATGTTGTCTTTGGACTAGTTATTTCTGGTTTTGAAGTGATCGAACAAATTGAAAATCTGAAAACTGATGCTGCAAGTAGACCGTATGCAGATGTACGAGTTATTGACTGCGGGGTGCTTGCCACAAAGTCAGCAAAAGACG
Seq C2 exon
TTTTTGAGAAAAAAAGGAAGAAGCCAACTCATTCAGAAGTCTCGGATTCCTCTTCCAATTCCTCATCCTCTTCAGAATCATCCTCAGAAAGTGAAATTGAACATGAGAGAAGCAGAAGAAGGAAACATAAGAGGAGACCGAAAGTTAAACATTCTAAAAAGAGACGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGAAATAAACATATAATAAGCCCAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-'13-11,'13-9,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(4.5=60.0)
A:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(21.1=56.0)
C2:
PF105004=SR-25=FE(55.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAAAACCTGCTCCACAC
R:
TGTTTATTTCTTGGCTCTTCTGAACT
Band lengths:
234-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]