GgaEX0007291 @ galGal3
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1855493-1857777:+
Coord C1 exon
chr2:1855493-1855522
Coord A exon
chr2:1856365-1856510
Coord C2 exon
chr2:1857555-1857777
Length
146 bp
Sequences
Splice sites
3' ss Seq
CAACTGTTTTATTTCTGCAGCGT
3' ss Score
8.8
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
Exon sequences
Seq C1 exon
AACAACAAAACCCGCTCCTCATCTTGATGG
Seq A exon
CGTACACGTTGTCTTTGGACTGGTTATTTCTGGTTTTGAAGTAATAGAACAAATAGAAAATCTGAAAACTGATACTGCCAGTAGACCCTATGCAGATGTACGAGTTATTGACTGTGGGGTGCTTGTTACAAAACCTGCAAAAGACG
Seq C2 exon
CTTTGGAGAAGAAGAAGAAAGTCTGTTCTGACTCCGAAGCTTCAGACTCCTCCTCCAGTGGATCAGACCCTTCAGAAACCTCGTCTGAAAGTGAAGCTGAAGATGAAAGAAGCAGAAGAAGAAAGCGTAAAAGAAGAGCTAAAACCAAACAGTCAAGAAAACGGAGGAAGGAAGAGAGGAAGAAAGAGGATCTGAGAAGCAAGCGAGCCTCAAACCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'8-13,'8-12,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.960
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(3.1=44.4)
A:
PF0016016=Pro_isomerase=PD(24.1=80.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAAAACCCGCTCCTCA
R:
TTTGAGGCTCGCTTGCTTCTC
Band lengths:
244-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]