RnoEX0060010 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130381037-130383253:+
Coord C1 exon
chr8:130381037-130381182
Coord A exon
chr8:130381967-130382189
Coord C2 exon
chr8:130383098-130383253
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTTTAAATATCCATTAAAAGTTT
3' ss Score
3.92
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTTCATGTTGTCTTTGGACTGGTTATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACGGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGAGTGCTTGCCACAAAGTTGACAAAAGATG
Seq A exon
TTTTTGAGAAAAAAAGGAAGAAACCAACACATTCAGAAGACTCGGACTCTTCTTCCAACTCCTCTTCCTCTTCAGAGTCATCCTCAGAAAGCGAAGTTGAACGAGAGAGAATCAGAAGGAGGAGACATAAGAGGAGGCCAAAAGTCAGACATACTAAAAAGAGACGGAAAGAGATGAGCGGTTCAGAGGAACTGAGAAGGAAGCGCACAGTGAGCCCTGAGGG
Seq C2 exon
TTACTCTGAGAGGAGTGATGTGAATGAAAAAAGATCAGGTGATTCAAACACTAAAAGAGAAAAGCCCGTTGTTCGACCAGAAGAGATTCCTCCAGTTCCCGAGAACCGATTTTTACTTAGAAGAGATGTGCCTGCCGTCGCTGTGGAGCCTGAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-'10-12,'10-10,11-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(25.5=80.0),PF105004=SR-25=PU(19.5=52.0)
A:
PF105004=SR-25=FE(55.6=100)
C2:
PF105004=SR-25=PD(24.1=60.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCATGTTGTCTTTGGACTGG
R:
ACGGCAGGCACATCTCTTCTA
Band lengths:
284-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]