BtaEX6093613 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15393204-15395102:+
Coord C1 exon
chr22:15393204-15393349
Coord A exon
chr22:15394296-15394518
Coord C2 exon
chr22:15394947-15395102
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTATTACTATTTATTAAAAGTTT
3' ss Score
4.35
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGTGCATGTTGTCTTTGGACTAGTTATTTCTGGTTTTGAAGTGATCGAACAAATTGAAAATCTGAAAACTGATGCTGCAAGTAGACCGTATGCAGATGTACGAGTTATTGACTGCGGGGTGCTTGCCACAAAGTCAGCAAAAGACG
Seq A exon
TTTTTGAGAAAAAAAGGAAGAAGCCAACTCATTCAGAAGTCTCGGATTCCTCTTCCAATTCCTCATCCTCTTCAGAATCATCCTCAGAAAGTGAAATTGAACATGAGAGAAGCAGAAGAAGGAAACATAAGAGGAGACCGAAAGTTAAACATTCTAAAAAGAGACGAAAGGAAGCAAGCAGTTCAGAAGAGCCAAGAAATAAACATATAATAAGCCCAAAAGG
Seq C2 exon
TCATTCTGAGAGGAGTGATACCAATGAAAAAAGATCTGTTGATTCAAATGCCAAAAGGGAAAAGCCTGTGGTCCGCCCAGAAGAGATTCCTCCAGTGCCCGAGAACCGATTTTTACTGAGAAGAGATATGCCTCTTGTCACAGTGGAGCCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(21.1=56.0)
A:
PF105004=SR-25=FE(55.6=100)
C2:
PF105004=SR-25=PD(22.6=56.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCATGTTGTCTTTGGACT
R:
TCAGGCTCCACTGTGACAAGA
Band lengths:
299-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]